In this section
@article{Sengar:2021:10.3389/fmolb.2021.693710,
author = {Sengar, A and Ouldridge, TE and Henrich, O and Rovigatti, L and Sulc, P},
doi = {10.3389/fmolb.2021.693710},
journal = {Frontiers in Molecular Biosciences},
pages = {1--22},
title = {A primer on the oxDNA model of DNA: When to use it, how to simulate it and how to interpret the results},
url = {http://dx.doi.org/10.3389/fmolb.2021.693710},
volume = {8},
year = {2021}
}
TY - JOUR
AB - The oxDNA model of DNA has been applied widely to systems in biology,biophysics and nanotechnology. It is currently available via two independentopen source packages. Here we present a set of clearly-documented exemplarsimulations that simultaneously provide both an introduction to simulating themodel, and a review of the model's fundamental properties. We outline howsimulation results can be interpreted in terms of -- and feed into ourunderstanding of -- less detailed models that operate at larger length scales,and provide guidance on whether simulating a system with oxDNA is worthwhile.
AU - Sengar,A
AU - Ouldridge,TE
AU - Henrich,O
AU - Rovigatti,L
AU - Sulc,P
DO - 10.3389/fmolb.2021.693710
EP - 22
PY - 2021///
SN - 2296-889X
SP - 1
TI - A primer on the oxDNA model of DNA: When to use it, how to simulate it and how to interpret the results
T2 - Frontiers in Molecular Biosciences
UR - http://dx.doi.org/10.3389/fmolb.2021.693710
UR - http://arxiv.org/abs/2104.11567v1
UR - https://www.frontiersin.org/articles/10.3389/fmolb.2021.693710/full
UR - http://hdl.handle.net/10044/1/89298
VL - 8
ER -
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