BibTex format
@article{Charniga:2024:10.1371/journal.pcbi.1012520,
author = {Charniga, K and Park, SW and Akhmetzhanov, AR and Cori, A and Dushoff, J and Funk, S and Gostic, KM and Linton, NM and Lison, A and Overton, CE and Pulliam, JRC and Ward, T and Cauchemez, S and Abbott, S},
doi = {10.1371/journal.pcbi.1012520},
journal = {PLoS Computational Biology},
title = {Best practices for estimating and reporting epidemiological delay distributions of infectious diseases},
url = {http://dx.doi.org/10.1371/journal.pcbi.1012520},
volume = {20},
year = {2024}
}
RIS format (EndNote, RefMan)
TY - JOUR
AB - Epidemiological delays are key quantities that inform public health policy and clinical practice. They are used as inputs for mathematical and statistical models, which in turn can guide control strategies. In recent work, we found that censoring, right truncation, and dynamical bias were rarely addressed correctly when estimating delays and that these biases were large enough to have knock-on impacts across a large number of use cases. Here, we formulate a checklist of best practices for estimating and reporting epidemiological delays. We also provide a flowchart to guide practitioners based on their data. Our examples are focused on the incubation period and serial interval due to their importance in outbreak response and modeling, but our recommendations are applicable to other delays. The recommendations, which are based on the literature and our experience estimating epidemiological delay distributions during outbreak responses, can help improve the robustness and utility of reported estimates and provide guidance for the evaluation of estimates for downstream use in transmission models or other analyses.
AU - Charniga,K
AU - Park,SW
AU - Akhmetzhanov,AR
AU - Cori,A
AU - Dushoff,J
AU - Funk,S
AU - Gostic,KM
AU - Linton,NM
AU - Lison,A
AU - Overton,CE
AU - Pulliam,JRC
AU - Ward,T
AU - Cauchemez,S
AU - Abbott,S
DO - 10.1371/journal.pcbi.1012520
PY - 2024///
SN - 1553-734X
TI - Best practices for estimating and reporting epidemiological delay distributions of infectious diseases
T2 - PLoS Computational Biology
UR - http://dx.doi.org/10.1371/journal.pcbi.1012520
UR - http://hdl.handle.net/10044/1/115522
VL - 20
ER -